Files
RGC-ADOA/output/16_gsea/gsea_RGC2-like_Hallmark.csv
T
rain 092f39a662 chore: 初始化 RGC-ADOA 分析仓库
纳入 script/doc/ref/output 及配置;忽略 data/(26G 原始/中间数据)。
git 身份:rain <wjs_Rain@126.com>。
2026-09-18 18:21:19 +08:00

12 KiB

1NameTermESNESNOM p-valFDR q-valFWER p-valTag %Gene %Lead_genes
2prerankAngiogenesis0.533486580375931.4037779580544140.070991432068543461.00.6899/2022.66%Spp1;Vtn;Pdgfa;Lpl;Vav2;Pglyrp1;Vcan;Ccnd2;Tnfrsf21
3prerankEstrogen Response Early0.409244522381155331.36517099300107780.0245398773006134980.87296945375370890.81237/12223.81%Slc1a1;Jak2;Siah2;Mreg;Fkbp5;Dynlt3;Fos;Syt12;Mybbp1a;Rasgrp1;Slc39a6;Slc22a5;Dhcr7;Svil;Med13l;Scarb1;Slc26a2;Klf10;Hspb8;Rapgefl1;B4galt1;Inhbb;Pdzk1;Sec14l2;Hr;Snx24;Gfra1;Ccnd1;Mast4;Mybl1;Nbl1;Elovl2;Itpk1;Flnb;Cbfa2t3;Slc2a1;Ncor2
4prerankCoagulation0.43720118349029831.32816127158502420.07959641255605380.83300958439174330.89322/4628.04%Plek;Sparc;Mmp15;Dct;Gng12;Htra1;Bmp1;Casp9;Furin;Wdr1;Cpq;P2ry1;Lrp1;Cd9;Sh2b2;Fbn1;Usp11;Lgmn;Lta4h;Msrb2;Apoa1;Timp3
5prerankEpithelial Mesenchymal Transition0.408766541405591161.32761910574047560.0457856399583766930.6268064123636520.89332/9222.67%Spp1;Sgcb;Tpm4;Calu;Fuca1;Mylk;Sparc;Col4a2;Matn2;Htra1;Pvr;Itga5;Pmp22;Bmp1;Igfbp2;Col16a1;Bdnf;Lama1;Tnfaip3;Col12a1;Grem1;Dcn;Vcan;Lrp1;Tpm1;Ppib;Vegfc;Fbn1;Edil3;Fermt2;Spock1;Colgalt1
6prerankAndrogen Response0.394255790088510971.27297529810590040.096537250786988450.82009947275172360.96520/7921.18%Pdlim5;Idi1;Fkbp5;Bmpr1b;Abcc4;Plpp1;Srp19;Pa2g4;Zbtb10;Iqgap2;Spcs3;Maf;Slc26a2;Srf;B4galt1;Ccnd3;Ccnd1;Pias1;Ube2i;Map7
7prerankCholesterol Homeostasis0.40502813420281051.25873486831623320.120390455531453360.77870514654086710.97419/5525.01%Sqle;Errfi1;Idi1;Mvk;Tm7sf2;Dhcr7;Ebp;Fads2;Lpl;Fbxo6;Nfil3;Cd9;Trib3;Lgmn;Gldc;Atxn2;Atf5;Gnai1;Mal2
8prerankUnfolded Protein Response0.37969603413847461.2547610914330470.095733610822060350.69278410875524890.97926/9524.27%Asns;Arfgap1;Sec11a;Exosc4;Cebpg;Imp3;Nfyb;Aldh18a1;Dkc1;Gosr2;Hyou1;Eif4a3;Spcs3;Serp1;Banf1;Yif1a;Nfya;Cebpb;Xpot;Dcp1a;Cnot6;Psat1;Preb;Parn;Nabp1;Eif2s1
9prerankWnt-beta Catenin Signaling0.45421214406795441.25397400814589880.154216867469879530.61041261980489680.97913/2628.77%Adam17;Ncstn;Axin2;Wnt5b;Maml1;Frat1;Ccnd2;Ppard;Gnai1;Ncor2;Hey1;Numb;Hdac11
10prerankComplement0.355539285993175141.18161253634433660.16407061266874350.96108608875701751.032/10423.44%Usp8;Dgkg;Xpnpep1;Jak2;Plek;Rnf4;Rasgrp1;Col4a2;Mmp15;Fdx1;Gng2;Prdm4;Casp9;Prss36;Prkcd;Gnb4;Tnfaip3;Kcnip2;Rce1;Cebpb;Cpq;Dock10;Lrp1;Zfpm2;Hspa1a;Casp7;Lgmn;Pla2g7;Gngt2;Psen1;Timp2;Lta4h
11prerankTNF-alpha Signaling via NF-kB0.35776314253614561.17344547815758670.180396246089676750.9160031592204411.030/9921.34%Slc16a6;Plek;Rcan1;Pdlim5;Phlda1;Btg2;Fos;Bcl6;Ripk2;Zbtb10;Nfkbia;Nr4a3;Klf10;B4galt1;Nfil3;Tnfaip3;Snn;Cflar;Mcl1;Plk2;Cebpb;Dnajb4;Ccnd1;Sik1;Mxd1;Tnip1;Smad3;Rel;Kdm6b;Slc2a3
12prerankEstrogen Response Late0.35284147709249491.16209701716985060.208418891170431220.89923678046716871.027/10025.60%Atp2b4;Jak2;Siah2;Idh2;Fkbp5;Dynlt3;Fos;Mettl3;Slc22a5;Dhcr7;Scarb1;Slc26a2;Hspb8;Rapgefl1;Pdzk1;Hr;Mdk;Ccnd1;Cd9;Nbl1;Plk4;Itpk1;Flnb;Snx10;Ncor2;Igfbp4;Nrip1
13prerankIL-2/STAT5 Signaling0.34861530766996931.1469629892927610.209562563580874880.90669626656989781.037/10829.33%Spp1;Mapkapk2;Prkch;Phlda1;Plpp1;Coch;Dcps;Spry4;Etv4;Furin;Arl4a;Nfil3;Eomes;Eno3;Ifngr1;Ccnd3;Col6a1;Slc29a2;Umps;Pou2f1;Pnp;Nop2;Rgs16;Mxd1;Ccnd2;Slc2a3;P4ha1;Socs2;Tnfrsf21;Snx14;Cdc42se2;Plec;Lrrc8c;Prnp;Adam19;Ctsz;Ahr
14prerankTGF-beta Signaling0.37546776738160511.12812992487361450.310779816513761460.94697796919924281.012/4029.35%Skil;Smad1;Klf10;Furin;Smad3;Ppp1ca;Hdac1;Ncor2;Id3;Smad7;Id1;Tjp1
15prerankDNA Repair0.33283372116044921.11670795043715350.250.94593646795495371.026/12718.15%Pola1;Taf6;Ell;Gtf2f1;Polr1d;Gtf2h1;Snapc4;Sec61a1;Ncbp2;Tmed2;Rfc2;Vps37b;Rad51;Ercc8;Pole4;Pold3;Taf12;Tyms;Vps37d;Polr2d;Ercc1;Aaas;Bcam;Umps;Pnp;Ddb1
16prerankUV Response Dn0.317605192972124861.05836731981464950.38746145940390551.01.055/11144.91%Atp2b4;Sdc2;Pdlim5;Rnd3;Igfbp5;Pmp22;Ltbp1;Mgmt;Bdnf;Vav2;Runx1;Prkca;Bckdhb;Smad3;Syne1;Nr3c1;Dbp;Slc7a1;Magi2;Smad7;Id1;Mmp16;Dlc1;Scaf8;Tjp1;Celf2;Anxa2;Ptprm;Zmiz1;Amph;Kalrn;Add3;Kcnma1;Ythdc1;Arhgef9;Rbpms;Dlg1;Adgrl2;Nfib;Insig1;Tgfbr3;Sri;Irs1;Plcb4;Col11a1;Atxn1;Cap2;Schip1;Mios;Cacna1a;Pik3r3;Aggf1;Nek7;Akt3;Mta1
17prerankMyogenesis0.32013057974873761.05345541242951280.377435897435897451.01.039/10133.95%Kcnh1;Flii;Myh9;Mylk;Cacna1h;Sparc;Igf1;Igfbp7;Col4a2;Svil;Hspb8;Ephb3;Eno3;Nos1;Cox6a2;Gaa;Dmd;Acsl1;Kifc3;Pick1;Gpx3;Sh2b1;Spdef;Cryab;Rb1;Dmpk;Prnp;Mef2a;Adam12;Ppfia4;Sorbs1;Speg;Mapk12;Mapre3;Agl;Cdh13;Rit1;Mras;Fabp3
18prerankApoptosis0.31304213093431671.02028041146244350.47866805411030181.01.026/9123.31%Ddit3;Dffa;Tgfb2;Btg2;Hmgb2;Hspb1;Cdc25b;Ebp;Dpyd;Gstm1;Casp9;Mgmt;Dap;Ifngr1;Casp2;Cflar;Mcl1;Dcn;Ccnd1;Nefh;Casp7;Ccnd2;Bax;Psen1;Timp2;Gpx3
19prerankHypoxia0.30266399446270721.0116699025182090.474437627811860941.01.036/12726.77%Ddit3;Errfi1;Xpnpep1;Sdc2;Siah2;Ndst1;Myh9;Fos;Slc37a4;Gapdhs;Scarb1;Tpst2;Efna3;Ncan;Hs3st1;Ndst2;Nfil3;Eno3;Tnfaip3;Dcn;Gcnt2;Prkca;Map3k1;Csrp2;Dpysl4;Gaa;Slc2a3;Klhl24;Nr3c1;P4ha1;Slc2a1;Mxi1;Btg1;Pgm2;Hk1;Nedd4l
20prerankKRAS Signaling Dn0.31258516926752810.99213742544389560.5059331175836031.01.021/7124.25%Cntfr;Skil;Tgfb2;Bmpr1b;Btg2;Slc38a3;Mast3;Sidt1;Igfbp2;Cacna1f;Gpr19;Snn;Kcnn1;Slc16a7;Nos1;Rgs11;Tnni3;Kcnmb1;Dtnb;Thrb;Htr1d
21prerankHedgehog Signaling0.352147662481936350.99175145890536010.50658682634730531.01.03/304.21%L1cam;Cntfr;Myh9
22prerankUV Response Up0.299507088617374350.99163841015460340.52312435765673171.01.041/10533.32%Asns;Cebpg;Maoa;Rxrb;Dnajb1;Btg2;Fos;Rasgrp1;Cnp;Clcn2;Ppat;Nfkbia;Igfbp2;Furin;Prkcd;Ccnd3;Ggh;Tgfbrap1;Lhx2;Ephx1;Tyro3;Plcl1;Mark2;Stk25;Pole3;Gpx3;E2f5;Dgat1;Btg1;Prpf3;Lyn;Sod2;Eif5;Psmc3;Bsg;Hnrnpu;Stip1;Tfrc;Pdap1;Gls;Rab27a
23prerankInterferon Gamma Response0.30977804256576220.98895806419173070.51764705882352951.01.027/7429.77%Jak2;Gpr18;Tapbp;Slc25a28;Ripk2;Nfkbia;Lats2;Mvp;Eif2ak2;Arl4a;Psme2;Tnfaip3;Pnp;Parp12;Casp7;Trim14;St8sia4;Stat2;Rapgef6;P2ry14;Ifi35;Btg1;Bpgm;St3gal5;Hif1a;Sod2;Pfkp
24prerankInflammatory Response0.313994872636505330.98334889165947350.5208556149732621.01.011/639.81%Slc4a4;Btg2;Rasgrp1;Tapbp;Kcnmb2;Ripk2;Nfkbia;Pvr;Slc31a1;Eif2ak2;Itga5
25prerankFatty Acid Metabolism0.28288263840223620.93068476878532640.66426364572605561.01.025/11124.24%Prdx6;Reep6;Maoa;Idi1;Kmt5a;Bmpr1b;Alad;Ostc;Gapdhs;Slc22a5;Hadhb;Acot8;Nbn;Eci1;Eno3;Cpt1a;Bckdhb;Ehhadh;Ephx1;Ccdc58;Acaa2;Acsl1;Hsph1;Erp29;Idh3g
26prerankApical Junction0.27668283677730160.92755408052410540.66465256797583081.01.039/13130.57%Pik3cb;Gtf2f1;Pbx2;Myh9;Map3k20;Baiap2;Nexn;Col9a1;Epb41l2;Lima1;Arhgef6;Bmp1;Inppl1;Col16a1;Nectin3;B4galt1;Vav2;Amigo2;Rhof;Mdk;Vcan;Msn;Itga9;Fbn1;Jam3;Tro;Gnai1;Mpp5;Vasp;Skap2;Pcdh1;Tspan4;Thbs3;Cdh6;Actn1;Cadm3;Tjp1;Map4k2;Speg
27prerankAllograft Rejection0.29243108508042640.91591294547279920.64146868250539961.01.014/5920.61%Jak2;Tgfb2;Csk;Tapbp;Ripk2;Ifngr1;Ccnd3;Inhbb;Galnt1;Ube2d1;St8sia4;Ccnd2;Mrpl3;Ube2n
28prerankp53 Pathway0.27542054071978280.91446375426995770.68377823408624231.01.027/12719.90%Ddit3;Nupr1;Sec61a1;Ralgds;Ctsf;Btg2;Fuca1;Fos;Dnttip2;Pdgfa;Csrnp2;Hdac3;Baiap2;Rap2b;Abhd4;Nol8;Rad51c;Stom;Ccnd3;Inhbb;Plk2;Rgs16;Mxd1;Ephx1;Trib3;Fgf13;Ccnd2
29prerankheme Metabolism0.27089134996287050.90492916654405550.70295015259409971.01.043/13934.37%Ezh1;Adipor1;Asns;Agpat4;Alad;Btg2;Aldh6a1;Khnyn;Ppox;Lrp10;Fbxo7;Narf;Ccnd3;Tns1;Slc25a38;Fbxo34;Bcam;Abcg2;Cast;Daam1;Pigq;Rbm5;Nr3c1;Slc2a1;Mxi1;Htatip2;Glrx5;Bpgm;Btrc;Snca;Mgst3;Sec14l1;Dcaf11;Bsg;Dcaf10;Prdx2;Tfrc;Synj1;Sdcbp;Gmps;Blvra;Ncoa4;Dmtn
30prerankMitotic Spindle0.264858152163508550.89573569182830020.74392712550607291.01.049/15533.17%Pdlim5;Pcnt;Tubgcp2;Hdac6;Arhgap10;Stk38l;Myh9;Cntrob;Cep192;Epb41l2;Dock2;Llgl1;Kptn;Alms1;Fgd6;Sass6;Pxn;Cttn;Arhgap4;Rhof;Katna1;Arhgap27;Rfc1;Cep131;Nin;Arhgap5;Wasf2;Mark4;Itsn1;Flnb;Rapgef6;Kif15;Rictor;Palld;Als2;Lmnb1;Tbcd;Cdc42ep4;Cd2ap;Ckap5;Bcr;Trio;Rhot2;Lrpprc;Pkd2;Smc3;Myo9b;Akap13;Vcl
31prerankKRAS Signaling Up0.275377690092697860.89190758142968130.70619097586568741.01.019/8921.54%Spp1;Btbd3;Adam17;Fuca1;Gadd45g;Dock2;Etv4;Gpnmb;Fbxo4;Tnfaip3;Gng11;Adam8;Map3k1;Rgs16;Nin;Sox9;Ccnd2;Map7;Sdccag8
32prerankE2F Targets0.25707130688620080.85382557387539470.80346232179226071.01.022/12616.00%Cse1l;Nup153;Rfc2;Ezh2;Jpt1;Hmgb2;Prim2;Pole4;Ubr7;Pa2g4;Asf1a;Pold3;Cdc25b;Slbp;Nbn;Zw10;Diaph3;Wdr90;Rad51c;Pms2;Dck;Prdx4
33prerankmTORC1 Signaling0.251334826884016260.84927884894341020.82727272727272731.01.032/16323.59%Sqle;Asns;Ddit3;Sec11a;Nupr1;Gtf2h1;Idi1;Btg2;Slc37a4;Tm7sf2;Dhcr7;Ebp;Igfbp5;Fads2;Serp1;Nfyc;Dhfr;Nfil3;Pno1;Pnp;Arpc5l;Cd9;Srd5a1;Trib3;Lgmn;Prdx1;Slc2a3;Psat1;P4ha1;Lta4h;Slc2a1;Hspd1
34prerankMyc Targets V20.27514578392266120.8406842518353480.76008724100327151.01.017/4827.95%Ipo4;Mybbp1a;Pa2g4;Gnl3;Tfb2m;Bysl;Slc29a2;Grwd1;Nop2;Srm;Cdk4;Plk4;Las1l;Hspd1;Prmt3;Exosc5;Tcof1
35prerankIL-6/JAK/STAT3 Signaling0.304412315096905970.83677086536157020.72835112692763941.01.08/2822.66%Itga4;Cntfr;Crlf2;Ifngr1;Hax1;Cd9;Stat2;Tnfrsf21
36prerankGlycolysis0.23808269410110960.80259003397566580.87018255578093311.01.040/13831.76%Pygb;Sdc2;Aldh7a1;Cacna1h;Xylt2;Rpe;Slc37a4;Slc16a3;Gapdhs;Gne;Chpf;Efna3;B4galt1;Chst12;Dcn;Hax1;Vcan;Gal3st1;Dpysl4;Sox9;Cyb5a;Srd5a3;P4ha1;Mxi1;Phka2;Spag4;Nasp;Galk2;Pgm2;Pfkfb1;Polr3k;Glce;Ppfia4;Me1;Hs6st2;Pfkp;Pam;Ext2;Agl;Ppp2cb
37prerankPI3K/AKT/mTOR Signaling-0.16989797724619446-0.7929941064460460.981.00.97563559322033924/8024.10%Cdk1;Arpc3;Akt1s1;Nck1;Grk2;Camk4;Arhgdia;Pla2g12a;Prkaa2;Mknk2;Ripk1;Tbk1;Them4;Cfl1;Mapk10;Ptpn11;Ppp2r1b;Cltc;Dusp3;Actr2;Hras;Rps6ka1;Ap2m1;Ywhab
38prerankInterferon Alpha Response0.26172776184711250.76515864296785770.82810685249709641.01.012/3526.52%Slc25a28;Cnp;Ripk2;Eif2ak2;Psme2;Parp12;Parp9;Trim14;Stat2;Ifi35;Mvb12a;Cd47
39prerankReactive Oxygen Species Pathway0.259407469615040460.75775428100431450.84067796610169491.01.013/3931.19%Prdx6;Sbno2;Oxsr1;Prdx4;Msra;Scaf4;Stk25;Prdx1;Gpx3;Prnp;Sod2;Pfkp;Prdx2
40prerankAdipogenesis0.222713059539285160.75015539933496170.95161290322580651.01.042/16029.77%Idh3a;Lipe;Reep6;Uqcrc1;Esyt1;Apoe;Mylk;Bcl6;Dram2;Dhcr7;Elmod3;Scarb1;Lama4;Lpl;Atp1b3;Hspb8;Stom;Arl4a;Ifngr1;Rab34;Samm50;Acaa2;Sdhb;Uck1;Mrpl15;Map4k3;Itsn1;Preb;Lifr;Nabp1;Gpx3;Idh3g;Angpt1;Dgat1;Miga2;Ephx2;Cpt2;Aifm1;Mgst3;Scp2;Me1;Sorbs1
41prerankXenobiotic Metabolism0.225814858823483620.73798577837433070.92148760330578521.01.017/9921.09%Vtn;Ssr3;Maoa;Pdlim5;Ptgds;Tgfb2;Apoe;Igf1;Angptl3;Hes6;Gcnt2;Spint2;Ephx1;Gstt2;Cyb5a;Ppard;Ndrg2
42prerankBile Acid Metabolism0.233834899177474270.7247973645948350.91224268689057421.01.024/6437.65%Lipe;Abca4;Idi1;Idh2;Cyp7b1;Fads2;Pex26;Pex6;Bmp6;Acsl1;Slc35b2;Dio2;Ephx2;Apoa1;Scp2;Pnpla8;Ttr;Abcd2;Rbp1;Abca5;Fdxr;Pex16;Dhcr24;Aldh9a1
43prerankApical Surface0.263978189297852160.69677590422039970.88658536585365851.01.04/2216.69%Sulf2;Hspb1;B4galt1;Atp6v0a4
44prerankNotch Signaling-0.20281253351939904-0.65978942071946060.94258373205741630.97399302251823660.99364406779661026/1917.91%St3gal6;Fzd1;Psenen;Fzd7;Psen2;Rbx1
45prerankSpermatogenesis0.194003017234917420.62205412337121120.97566137566137571.01.012/6821.45%Tle4;Ezh2;Gapdhs;Gsg1;Arl4a;Phf7;Oaz3;Nos1;Nefh;Jam3;Map7;Tnni3
46prerankG2-M Checkpoint0.178171427580892240.59297838804668720.99694189602446481.01.043/13135.86%Sqle;Kmt5a;Ezh2;Jpt1;Map3k20;Dkc1;Prim2;Polq;Cdc25b;Ccnt1;Katna1;Ccnd1;Cdk4;Plk4;Smad3;Dmd;Cul5;Tmpo;Mtf2;Atf5;Hmgb3;Slc7a1;E2f3;Wrn;Kif15;Nasp;Lmnb1;Gins2;Hif1a;Slc38a1;Slc7a5;Srsf10;Hnrnpu;Cbx1;Pura;Nup50;Meis1;Lbr;Tle3;Gspt1;Ythdc1;Cul4a;Syncrip
47prerankPperoxisome0.185933075379570960.59068540123195010.99044585987261151.01.015/7323.88%Idi1;Idh2;Abcb9;Pex5;Acot8;Mvp;Ercc1;Pex6;Ehhadh;Cnbp;Prdx1;Acsl1;Slc35b2;Cdk7;Cadm1
48prerankPancreas Beta Cells0.226805712727560170.58994465389397270.96737766624843161.01.01/191.33%Sec11a
49prerankMyc Targets V10.15815511116351150.54094899429643221.01.01.023/17921.40%Tardbp;Snrpd2;Rps6;Ncbp2;Prpf31;Pa2g4;Txnl4a;Tyms;Pwp1;Tufm;Lsm2;Ruvbl2;Mrpl9;Gnl3;Prdx4;Prps2;Srm;Cdk4;Cnbp;Hddc2;Psmd8;Xpot;Pole3
50prerankOxidative Phosphorylation0.155775521221565020.52617919020856221.01.01.013/16610.65%Mfn2;Idh3a;Mrps15;Uqcrc1;Idh2;Aldh6a1;Ndufs8;Mrpl35;Hadhb;Tomm22;Fdx1;Acat1;Eci1
51prerankProtein Secretion0.113722265619332990.364845338198462151.00.99997865391593911.031/8543.12%Tmed2;Gosr2;Zw10;Cln5;Tsg101;Copb1;Stx16;Vamp4;Rab22a;Vps45;Stx7;Lman1;Sgms1;Pam;Vamp7;M6pr;Sec24d;Atp6v1h;Dst;Snx2;Cope;Gbf1;Arfgef1;Ppt1;Arfgef2;Arcn1;Tpd52;Rps6ka3;Rab14;Arfgap3;Galc