Files
RGC-ADOA/output/16_gsea/gsea_Muller_Hallmark.csv
T
rain 092f39a662 chore: 初始化 RGC-ADOA 分析仓库
纳入 script/doc/ref/output 及配置;忽略 data/(26G 原始/中间数据)。
git 身份:rain <wjs_Rain@126.com>。
2026-09-18 18:21:19 +08:00

13 KiB

1NameTermESNESNOM p-valFDR q-valFWER p-valTag %Gene %Lead_genes
2prerankTNF-alpha Signaling via NF-kB-0.48652809585459444-2.08701234613879950.00.00149276011344976830.00127/1197.15%Phlda1;Gch1;Ier3;Icam1;Plk2;Nr4a1;Gadd45a;Il1a;Tnf;Rel;Serpinb8;Fosl2;Rhob;Sik1;Bhlhe40;Hbegf;Junb;Ptpre;Ehd1;Map2k3;Ripk2;Cebpd;Dusp5;Birc3;Cd44;Trib1;Tank
3prerankOxidative Phosphorylation0.499642409403255441.92660595894157960.00.0024588820283044640.00374/16924.06%Timm8b;Hsd17b10;Ndufs6;Timm10;Ndufs2;Mrpl34;Ndufb5;Ndufv1;Cox4i1;Mrpl11;Surf1;Cyc1;Uqcr10;Ndufb2;Cox7a2l;Ndufa9;Uqcr11;Polr2f;Timm13;Cox6c;Ndufs7;Tomm22;Oat;Uqcrh;Ndufb8;Atp6v1f;Ndufb3;Cyb5a;Cox17;Ndufb7;Ldha;Atp6v0b;Cox6b1;Ndufa8;Uqcrq;Ndufa2;Slc25a4;Uqcrfs1;Cox5b;Prdx3;Ndufs8;Ndufa7;Ndufa3;Grpel1;Ndufa5;Atp1b1;Cox7c;Suclg1;Ech1;Cox7b;Mrpl35;Cox8a;Mrps12;Ndufa1;Ndufb4;Ndufc2;Eci1;Uqcrb;Acadvl;Slc25a5;Mdh1;Ndufc1;Vdac2;Bckdha;Ndufab1;Acaa2;Vdac1;Gpx4;Mdh2;Got2;Cox7a2;Ldhb;Slc25a12;Fdx1
4prerankMyc Targets V10.47164359500022811.83450139320875260.00.00286869569968854160.00783/17229.36%Pold2;Txnl4a;Kpna2;Snrpb2;Pcbp1;Ranbp1;Rack1;Snrpd2;Cyc1;Ran;Rps2;Snrpa;Odc1;Hspe1;Prdx4;Rpl18;Snrpd1;Nme1;Rps3;Eef1b2;Ppm1g;Hsp90ab1;Psmb3;Npm1;Rpl22;Bub3;Rps5;C1qbp;Ldha;Ppia;Psma7;Ncbp1;Prdx3;Set;Rsl1d1;Rpl34;Eif3d;Nolc1;Dut;Rpl6;Mrpl23;Psmd7;Eif3b;Psmd3;Mrps18b;Cct5;Psma4;Cct3;Hnrnpa1;Gspt1;Rpl14;Tcp1;Cct7;Snrpd3;Rad23b;Ndufab1;Ywhaq;Psma6;Trim28;Vdac1;Srsf3;Hspd1;Glo1;Ywhae;Got2;Mrpl9;Stard7;Pgk1;Psmc4;Pcna;Cox5a;Cnbp;Eif4g2;Eif4a1;Sf3b3;Lsm7;Hnrnpd;Canx;Rps10;Vdac3;Clns1a;U2af1;Serbp1
5prerankInflammatory Response-0.3970909218965643-1.6361380938620840.00.062695924764890280.08118/9010.02%Rtp4;Gch1;Icam1;Il1a;Ifitm1;Lyn;Ly6e;Hbegf;Ptpre;Irf7;Ripk2;Scarf1;Tnfrsf1b;P2rx4;Sri;Rgs16;Sgms2;Il15
6prerankIL-2/STAT5 Signaling-0.36412046676323784-1.55383628549766080.00.080609046126287510.15130/12011.79%Phlda1;Gsto1;Capg;Emp1;Ecm1;Smpdl3a;Rhob;Pnp;Coch;Bhlhe40;Itih5;Bcl2;Tnfrsf1b;Nfkbiz;Penk;P2rx4;Dcps;Lrrc8c;Cd44;Twsg1;Tiam1;Tnfrsf21;Spry4;Prkch;Plpp1;Rgs16;Muc1;Hopx;Pim1;Pdcd2l
7prerankmTORC1 Signaling0.390426771561218241.51812690585111150.0025510204081632650.116933500901590060.34668/16228.36%Ddit3;Asns;Abcf2;M6pr;Sc5d;Tuba4a;Got1;Serpinh1;Sytl2;Phgdh;Hmgcr;Hspa5;Rpn1;Psme3;Fkbp2;Dhcr24;Psmc2;Hspe1;Ykt6;Xbp1;Hmbs;Arpc5l;Ppa1;Hmgcs1;Ldha;Rdh11;Vldlr;Ppia;Aldoa;Ebp;Pgm1;Cacybp;Gapdh;Igfbp5;Mllt11;Acly;Cct6a;Actr3;Sord;Psmd13;Ak4;Hsp90b1;Psmb5;Psma4;Stip1;Nupr1;Edem1;Fads1;Slc37a4;Insig1;Hspd1;Pik3r3;Pgk1;Psmc4;Calr;Tpi1;Dhcr7;Fdxr;Pdk1;Tubg1;Mthfd2;Lgmn;Psat1;Qdpr;Hk2;Canx;Gclc;Slc7a11
8prerankApical Surface-0.4741446461238155-1.47127942211387390.04532577903682720.114942528735632180.2595/245.05%Mal;Atp8b1;Lyn;Crybg1;Ephb4
9prerankPancreas Beta Cells0.51569078147517361.41253086543798020.080188679245283010.243224413966449920.6758/2114.03%Pcsk2;Mafb;Chga;Scgn;Isl1;Srprb;Neurod1;Syt13
10prerankUnfolded Protein Response0.386610121534057771.39573735202800760.0281501340482573740.229331730506529720.74431/9322.12%Hyou1;Asns;Exosc4;Tubb2a;Atf4;Hspa5;Rps14;Gosr2;Dkc1;Eif4a3;Nfyb;Shc1;Xbp1;Yif1a;Npm1;Srprb;Herpud1;Pdia5;Wfs1;Nolc1;Eef2;Atp6v0d1;Hsp90b1;Lsm4;Dcp2;Edem1;Cxxc1;Eif4a2;Dctn1;Ifit1;Ern1
11prerankPperoxisome0.39610852927542231.38730796743415820.0488466757123473540.205453253920550780.76625/7422.29%Pex11a;Dhcr24;Nudt19;Hras;Pex6;Rdh11;Cln6;Pex11b;Ercc1;Pex13;Abcb4;Slc25a4;Fdps;Crat;Itgb1bp1;Ech1;Ywhah;Abcd2;Scp2;Aldh9a1;Fads1;Sod1;Pex5;Msh2;Slc25a19
12prerankApoptosis-0.30474906508695104-1.28980327447219680.042918454935622320.31556948798328110.64114/1156.59%Rnasel;Bik;Gch1;Ier3;Emp1;Gadd45a;Il1a;Tnf;Rhob;Birc3;Satb1;Gpx3;Lgals3;Cd44
13prerankCholesterol Homeostasis0.3768236919801621.24770462676076630.150220913107511040.52760582950190070.98420/5319.47%Gnai1;Cxcl16;Jag1;Sc5d;Hmgcr;Sema3b;Fabp5;Pnrc1;Pmvk;Hmgcs1;Fdft1;Ebp;Fdps;Clu;Ech1;Gusb;Lss;Aldoc;Pcyt2;Acss2
14prerankInterferon Alpha Response-0.3358184776454081-1.2450155433246010.108771929824561410.346320346320346360.74815/6010.02%Rtp4;Ifitm1;Psme2;Ly6e;Irf7;Ripk2;Psmb8;Isg15;Lpar6;Parp9;Lap3;Cmtr1;Psme1;Cnp;Il15
15prerankAllograft Rejection-0.32022178458500483-1.23840717959783970.121118012422360250.313053120934894350.7587/643.29%Capg;Icam1;Tnf;Ly75;Lyn;Irf7;Ripk2
16prerankKRAS Signaling Dn0.34890096858060821.21734145372114820.151599443671766340.56042019561772580.99511/786.51%Krt15;Rsad2;P2rx6;Tfap2b;Clstn3;Klhdc8a;Adra2c;Ypel1;Cacna1f;Sncb;Pde6b
17prerankApical Junction0.324393467789990841.2094721528952550.1426684280052840.52638289346665950.99724/12713.75%Amigo2;Gnai1;Thbs3;Wnk4;Nrxn2;Atp1a3;Vcam1;Map4k2;Cx3cl1;Amigo1;Zyx;Dhx16;Shc1;Calb2;Cadm3;Hras;Nlgn3;Pkd1;Lima1;Mdk;Nectin1;Fscn1;Crat;Hadh
18prerankPI3K/AKT/mTOR Signaling0.33867268734177971.2072746422449920.1495198902606310.47989180919075460.99726/8526.39%Ddit3;Adcy2;Akt1;Arhgdia;Mknk2;Ywhab;Akt1s1;Hras;Pla2g12a;Gngt1;Cfl1;Ecsit;Actr3;Ap2m1;Smad2;Hsp90b1;Pin1;Ralb;Arf1;Pik3r3;Traf2;Calr;Atf1;Tsc2;Cdkn1b;Pdk1
19prerankAdipogenesis0.31033360110023461.20367017310936770.13546798029556650.445653739736030340.99752/16622.80%Sult1a1;Acads;Ddt;Apoe;Cyc1;Uqcr10;Uqcr11;Sparcl1;Ndufb7;Chchd10;Pfkfb3;Tkt;Aldoa;Uqcrq;Cd151;Cd302;Jagn1;Reep6;Pgm1;Prdx3;Cd36;Agpat3;Crat;Hadh;Grpel1;Ndufa5;Dgat1;Suclg1;Ech1;Cox7b;Acly;Cox8a;Fzd4;Elmod3;Aplp2;Itga7;Scp2;Slc19a1;Sod1;Riok3;Bckdha;Ndufab1;Coq9;Arl4a;Gphn;Uck1;Acaa2;Dhrs7;Ubc;Gpx4;Mdh2;Gpat4
20prerankBile Acid Metabolism0.324225231426787331.12642562188710740.24928366762177650.64210972078028521.019/6922.90%Pex11a;Pxmp2;Pex16;Bmp6;Dhcr24;Pfkm;Pex6;Pex13;Rxra;Bcar3;Abcd2;Optn;Pecr;Scp2;Aldh9a1;Fads1;Sod1;Abca4;Slc29a1
21prerankUV Response Up0.29666777852690941.09610466100371770.27770177838577290.69315253895331491.028/10518.58%Cck;Cyb5r1;Dnajb1;Asns;Sult1a1;Mapk8ip2;Eno2;Tuba4a;Rpn1;Hspa13;Ykt6;Atp6v1f;Polg2;Aldoa;Slc25a4;Grpel1;Bsg;Dgat1;Nfkbia;Grina;Dnaja1;Cdc34;Mrpl23;Creg1;Furin;Psmc3;Olfm1;Stip1
22prerankWnt-beta Catenin Signaling0.37678474539609821.0939284839052410.33441558441558440.6505499309171241.03/283.29%Gnai1;Jag1;Hdac11
23prerankDNA Repair0.293487152835506251.09254363045064970.28719275549805950.61122343041363861.037/12423.07%Bola2;Guk1;Polr2j;Polr2i;Eif1b;Vps28;Surf1;Nt5c;Dad1;Mpg;Polr2f;Nme1;Rfc3;Polr2c;Aprt;Cox17;Edf1;Ercc1;Pde6g;Usp11;Cant1;Ak1;Rbx1;Dut;Polr2e;Ercc5;Polr1c;Mrpl40;Tmed2;Rae1;Taf10;Pom121;Gpx4;Gtf2h5;Ak3;Nelfcd;Gsdme
24prerankFatty Acid Metabolism0.29186565229084771.08276184251137160.316205533596837950.60088929566690341.034/11522.45%Hsd17b10;Alad;Acads;Eno2;Uros;Mif;Lgals1;Dhcr24;Odc1;Bphl;Hmgcs1;Hsp90aa1;Ldha;Rdh11;Aldoa;Mcee;Reep6;Ncaph2;Cd36;Crat;Hadh;Suclg1;Ech1;Ywhah;Eci1;Acadvl;Auh;Mdh1;Gabarapl1;Aldh9a1;Grhpr;Acaa2;Ephx1;Mdh2
25prerankInterferon Gamma Response-0.26040720366549586-1.07160689029244180.30672268907563030.76597253321391250.97815/1117.04%Rtp4;Gch1;Icam1;Pnp;Psme2;Ly6e;Irf7;Cd274;Ripk2;Psmb8;Isg15;Lap3;Cmtr1;Sri;Psme1
26prerankKRAS Signaling Up-0.24696967558582184-1.05051222510818980.33333333333333330.76943490736594180.98317/10610.19%Emp1;Tspan1;Plvap;Hbegf;Galnt3;Psmb8;Tnfrsf1b;Prdm1;Birc3;Satb1;Trib1;Mall;Etv5;Rgs16;Id2;Spry2;Dusp6
27prerankE2F Targets0.27795110193591841.03360167732877770.37335092348284960.71283472134277461.043/11530.16%Pold2;Kpna2;Ranbp1;Jpt1;Kif22;Naa38;Ran;Lyar;Prdx4;Nme1;Rfc3;Hus1;Tipin;Anp32e;Lmnb1;Hmgb2;Nolc1;Dut;Suv39h1;Orc6;Exosc8;Gspt1;Rfc1;Phf5a;Msh2;Snrpb;Psip1;Stmn1;Smc4;Pcna;Ak2;Cdkn1b;Pnn;Tubg1;Asf1a;Mthfd2;Hnrnpd;Smc1a;Nup107;Pms2;Rpa1;Ssrp1;Pop7
28prerankMyogenesis0.283330175358489531.02888868068523640.41223404255319150.68835036336812191.029/9821.03%Camk2b;Ckb;Gadd45b;Fabp3;Pfkm;Bin1;Pde4dip;Cacna1h;Ctf1;Fdps;Cd36;Cryab;Bag1;Crat;Chrnb1;Clu;Ak1;Sgcd;Agrn;Gsn;Itga7;Sparc;Igfbp7;Gaa;Ptp4a3;Prnp;Eif4a2;Flii;Plxnb2
29prerankEstrogen Response Early0.26843966313739681.02053786934827650.434838709677419330.67576117497174451.025/13115.64%Krt15;Cyp26b1;Pex11a;Krt19;Isg20l2;Mreg;Sema3b;Adcy1;Unc119;Podxl;Calb2;Xbp1;Mlph;Sh3bp5;Fdft1;Elovl2;Kazn;Dlc1;Bag1;Slc16a1;Sec14l2;Wfs1;Cant1;Syt12;Klf10
30prerankComplement0.266554049984804361.00507178333845730.452574525745257470.68307742746298021.025/11816.09%Gngt2;Hpcal4;Kcnip3;Msrb1;Calm3;Hspa5;Plat;Dyrk2;Mt3;Serping1;Cdk5r1;Mmp15;Calm1;Plek;Dgkg;Ctsl;L3mbtl4;Prdm4;Cd36;Clu;Ctsb;Gng2;Rce1;Ppp4c;Ltf
31prerankGlycolysis0.264772586715215861.00415781545392570.46410256410256410.65277463370463751.053/13929.47%Nol3;Galk1;Pgm2;Eno2;Got1;Mif;Hspa5;Tgfa;Cyb5a;Pkm;Ldha;Cacna1h;Vldlr;Cln6;Pgam1;Ppia;Hax1;Aldoa;Paxip1;Adora2b;B3gat1;Ndufv3;Glce;Irs2;Gusb;Agrn;Ak4;Mdh1;Aldh9a1;Sod1;Slc37a4;Chst2;Mdh2;Ak3;Got2;Copb2;Pgk1;Stmn1;Lhx9;Psmc4;Tpi1;Me2;Idua;Lhpp;Dsc2;Pygl;Ext2;Hk2;P4ha2;Gclc;Fkbp4;Vcan;Sdc3
32prerankheme Metabolism0.254134060815763730.97652036932708620.50577663671373550.69452240563108821.020/14315.06%Ank1;Asns;Alas2;Alad;Ackr1;Add2;Uros;Ncoa4;Hagh;Slc30a1;Hmbs;Prdx2;Arl2bp;Cdr2;Slc25a38;Rad23a;Bsg;Vezf1;Ctsb;Tyr
33prerankEstrogen Response Late-0.2237607098494398-0.95789223247138010.54958677685950411.00.99731/11119.84%Krt13;Tjp3;Prss23;Bcl2;Hr;Frk;Mettl3;Mapk13;Cd44;Tiam1;Papss2;Id2;Myof;Atp2b4;Pdcd4;Etfb;Idh2;Pdlim3;Slc22a5;Dnajc1;Cav1;Tob1;Hmgcs2;Tsta3;Slc9a3r1;Snx10;Slc24a3;Btg3;St6galnac2;Dnajc12;Emp2
34prerankp53 Pathway0.250537306931593760.95349519642608990.54731457800511510.72244804869299131.035/13018.98%Ddit3;Cdkn2aip;Rack1;Upp1;Prkab1;S100a4;Aen;Mknk2;Hint1;Zmat3;Tgfa;Rpl18;Hras;Nol8;Cdk5r1;Ei24;Jun;Tcn2;Rrp8;Rpl36;Pmm1;Ctsf;Ak1;Epha2;Slc3a2;Rxra;Dnttip2;Acvr1b;Mxd1;Rps12;Ercc5;Ctsd;Ip6k2;Nupr1;Cd81
35prerankMitotic Spindle-0.21097370166091295-0.93337161852488180.66826923076923071.00.99870/15732.98%Brca2;Katnb1;Katna1;Mid1ip1;Cdc42ep1;Tubd1;Tiam1;Tubgcp5;Tubgcp3;Rasa2;Fgd6;Palld;Dock4;Vcl;Alms1;Tbcd;Mid1;Ranbp9;Cd2ap;Synpo;Hdac6;Cdk5rap2;Rasal2;Mark4;Ezr;Shroom2;Tsc1;Pdlim5;Arhgef3;Wasl;Taok2;Arfgef1;Sorbs2;Map1s;Kif3b;Pafah1b1;Nin;Wasf2;Cttn;Nf1;Ssh2;Clasp1;Itsn1;Trio;Sass6;Pcgf5;Capzb;Nedd9;Map3k11;Rasa1;Cdc42;Dst;Cntrl;Ralbp1;Myo1e;Bcl2l11;Pxn;Abi1;Hook3;Tlk1;Kif5b;Fgd4;Pcm1;Arhgef11;Flnb;Arhgef12;Notch2;Rhot2;Tubgcp2;Kptn
36prerankMyc Targets V20.306431258095235860.9312233328578050.58370370370370370.7469878695153271.010/3619.05%Pes1;Hspe1;Bysl;Npm1;Ipo4;Imp4;Nolc1;Sord;Tfb2m;Slc19a1
37prerankHypoxia-0.21554093131008698-0.93004888287731580.62096774193548391.00.99822/12814.70%Plac8;Ier3;Fosl2;Pgf;Anxa2;Bhlhe40;Gck;Bcl2;Ccng2;Gys1;Klf7;Pygm;Atp7a;Tpst2;Ankzf1;Ugp2;Pim1;Tiparp;Ndst1;Nr3c1;Cav1;Noct
38prerankEpithelial Mesenchymal Transition0.245527792431353030.90200885674778120.65039577836411610.78176055953226591.013/1117.43%Col1a2;Efemp2;Dpysl3;Col8a2;Eno2;Vcam1;Sfrp1;Gadd45b;Serpinh1;Lgals1;Scg2;Aplp1;Colgalt1
39prerankXenobiotic Metabolism-0.20943592202044836-0.87807434370795160.78486055776892431.01.019/11414.43%Gch1;Gsto1;Aldh3a1;Hes6;Lpin2;Ddah2;Papss2;Hsd17b2;Gsr;Smox;Id2;Cdo1;Pros1;Ccl25;Alas1;Slc35b1;Slc6a12;Mpp2;Cbr1
40prerankCoagulation-0.2228080859438533-0.84538622650414240.74846625766871171.01.011/6111.22%Dusp14;Prss23;A2m;Arf4;Klf7;Dpp4;Capn5;Pros1;Dusp6;Iscu;Gng12
41prerankG2-M Checkpoint0.221121278684946660.83299886151159790.79667519181585680.9011802633735861.024/12220.94%Kpna2;Jpt1;Kif22;Prmt5;Dkc1;Odc1;Cdc7;Snrpd1;Hus1;Hmgn2;Bub3;Upf1;Lmnb1;Hspa8;Chmp1a;Ncl;Nolc1;E2f3;Suv39h1;Orc6;Marcks;Gspt1;Nusap1;Rad23b
42prerankIL-6/JAK/STAT3 Signaling-0.23835706231542095-0.8306506266139490.73952095808383231.01.06/427.29%Tnf;Bak1;Tnfrsf1b;A2m;Cd44;Tnfrsf21
43prerankAndrogen Response0.225750063792626880.79987009501454650.84779706275033370.93027703404185561.018/8324.65%Mak;Krt19;Akt1;Hmgcr;Ncoa4;Dhcr24;Elk4;Hmgcs1;Uap1;Sord;Dbi;Ptpn21;Fads1;Insig1;Herc3;Inpp4b;Tsc22d1;Abcc4
44prerankUV Response Dn-0.18615944812518-0.7997773461661420.86538461538461541.01.050/11933.36%Rnd3;Anxa2;Bhlhe40;Pparg;Sri;Col11a1;Rasa2;Atp2b4;Nipbl;Nr3c1;Cav1;Mapk14;Slc7a1;Akt3;Vav2;Sipa1l1;Pdlim5;Lpar1;Lamc1;Plcb4;Dusp1;Grk5;Kcnma1;Met;Fyn;Atp2b1;Mta1;Amph;F3;Nek7;Celf2;Cited2;Nfkb1;Apbb2;Pten;Igf1r;Gja1;Atrx;Map2k5;Scaf8;Phf3;Pdgfrb;Sfmbt1;Mmp16;Prdm2;Notch2;Magi2;Bmpr1a;Ythdc1;Cdk13
45prerankProtein Secretion0.220458528136657340.78722762199213650.8630319148936170.91774844465954241.037/8936.47%M6pr;Ergic3;Gosr2;Ykt6;Anp32e;Ap2m1;Ap1g1;Igf2r;Ica1;Rer1;Sod1;Stx7;Krt18;Tmed2;Rab14;Tmx1;Scrn1;Arf1;Copb2;Bnip3;Ap2s1;Sec22b;Stx16;Clta;Vamp3;Cd63;Arfgap3;Yipf6;Lamp2;Atp1a1;Sh3gl2;Scamp1;Tpd52;Vps45;Cltc;Tmed10;Abca1
46prerankAngiogenesis-0.27428141084925045-0.76707513178322250.78787878787878781.01.04/1715.44%Pglyrp1;Tnfrsf21;Vav2;Vegfa
47prerankReactive Oxygen Species Pathway-0.22922053339466036-0.76586276608607880.84097859327217131.01.06/378.12%Junb;Mbp;Txnrd1;Gpx3;Sbno2;Gsr
48prerankHedgehog Signaling0.25896996139464610.73585740222948280.83033033033033030.95150255591836891.03/2611.07%Scg2;Cdk5r1;Vldlr
49prerankNotch Signaling-0.23588243860578473-0.7351616427244720.85470085470085470.98797149613846541.014/2732.76%Lfng;Notch3;Cul1;Kat2a;Fzd7;Arrb1;Hes1;Tcf7l2;Fbxw11;Ccnd1;Notch1;Dtx1;Maml2;Notch2
50prerankSpermatogenesis0.171159982466382170.56361726302699560.99158485273492280.99486366865198631.07/5914.21%Gsg1;Gad1;Pcsk1n;Tsn;Pebp1;Snap91;Coil
51prerankTGF-beta Signaling-0.12918116358539997-0.45669515299815531.00.99925361994327511.08/4621.76%Junb;Id2;Tgfbr1;Arid4b;Smurf2;Fnta;Wwtr1;Bmpr2