RGC-ADOA/output/12_inflammation/key_gene_detection_rates.csv

1	group	gene	det_WT	n_WT	det_V291D	n_V291D
2	RGC2-like	Ifnar1	0.4286	7	0.0496	141
3	RGC2-like	Ifnar2	0.0	7	0.0284	141
4	RGC2-like	Jak1	0.4286	7	0.2411	141
5	RGC2-like	Jak2	0.0	7	0.1277	141
6	RGC2-like	Stat1	0.0	7	0.0213	141
7	RGC2-like	Stat2	0.1429	7	0.1844	141
8	RGC2-like	Stat3	0.4286	7	0.1773	141
9	RGC2-like	Irf7	0.0	7	0.0071	141
10	RGC2-like	Irf9	0.1429	7	0.078	141
11	RGC2-like	Isg15	0.0	7	0.0142	141
12	RGC2-like	Ifit1	0.0	7	0.0071	141
13	RGC2-like	Ifit2	0.1429	7	0.0142	141
14	RGC2-like	Ifit3	0.0	7	0.0071	141
15	RGC2-like	Mx1	0.0	7	0.0	141
16	RGC2-like	Tnf	0.0	7	0.0	141
17	RGC2-like	C3	0.0	7	0.0	141
18	RGC2-like	C1qa	0.0	7	0.0	141
19	RGC2-like	Mb21d1	0.0	7	0.0	141
20	RGC2-like	Tmem173	0.0	7	0.0	141
21	RGC2-like	Nlrp3	0.0	7	0.0	141
22	RGC2-like	Gfap	0.0	7	0.0	141
23	RGC2-like	Serpina3n	0.0	7	0.0496	141
24	RGC2-like	Apoe	0.2857	7	0.5461	141
25	RGC2-like	Lcn2	0.0	7	0.0071	141
26	RGC2-like	Spp1	0.0	7	0.0638	141
27	RGC2-like	Trem2	0.0	7	0.0	141
28	RGC1-like	Ifnar1	0.2742	62	0.0936	801
29	RGC1-like	Ifnar2	0.1452	62	0.0474	801
30	RGC1-like	Jak1	0.5645	62	0.2772	801
31	RGC1-like	Jak2	0.4677	62	0.1823	801
32	RGC1-like	Stat1	0.129	62	0.0449	801
33	RGC1-like	Stat2	0.4355	62	0.1823	801
34	RGC1-like	Stat3	0.4355	62	0.171	801
35	RGC1-like	Irf7	0.0161	62	0.005	801
36	RGC1-like	Irf9	0.1129	62	0.0424	801
37	RGC1-like	Isg15	0.0161	62	0.0062	801
38	RGC1-like	Ifit1	0.0	62	0.0012	801
39	RGC1-like	Ifit2	0.0161	62	0.0162	801
40	RGC1-like	Ifit3	0.0161	62	0.0062	801
41	RGC1-like	Mx1	0.0	62	0.0	801
42	RGC1-like	Tnf	0.0	62	0.0	801
43	RGC1-like	C3	0.0	62	0.015	801
44	RGC1-like	C1qa	0.0	62	0.0025	801
45	RGC1-like	Mb21d1	0.0	62	0.0025	801
46	RGC1-like	Tmem173	0.0	62	0.0	801
47	RGC1-like	Nlrp3	0.0	62	0.0	801
48	RGC1-like	Gfap	0.0	62	0.0025	801
49	RGC1-like	Serpina3n	0.0161	62	0.0187	801
50	RGC1-like	Apoe	0.3226	62	0.5381	801
51	RGC1-like	Lcn2	0.0	62	0.0025	801
52	RGC1-like	Spp1	0.0	62	0.035	801
53	RGC1-like	Trem2	0.0	62	0.0025	801
54	Muller	Ifnar1	0.0546	183	0.0473	2389
55	Muller	Ifnar2	0.1148	183	0.054	2389
56	Muller	Jak1	0.3224	183	0.1984	2389
57	Muller	Jak2	0.1858	183	0.085	2389
58	Muller	Stat1	0.0984	183	0.0448	2389
59	Muller	Stat2	0.1038	183	0.0603	2389
60	Muller	Stat3	0.2131	183	0.1436	2389
61	Muller	Irf7	0.0273	183	0.0113	2389
62	Muller	Irf9	0.0656	183	0.0343	2389
63	Muller	Isg15	0.0109	183	0.0117	2389
64	Muller	Ifit1	0.0219	183	0.0126	2389
65	Muller	Ifit2	0.0383	183	0.0205	2389
66	Muller	Ifit3	0.0328	183	0.0193	2389
67	Muller	Mx1	0.0	183	0.0	2389
68	Muller	Tnf	0.0055	183	0.0021	2389
69	Muller	C3	0.0	183	0.0092	2389
70	Muller	C1qa	0.0	183	0.0054	2389
71	Muller	Mb21d1	0.0	183	0.0	2389
72	Muller	Tmem173	0.0055	183	0.0008	2389
73	Muller	Nlrp3	0.0	183	0.0	2389
74	Muller	Gfap	0.0164	183	0.0071	2389
75	Muller	Serpina3n	0.0109	183	0.0092	2389
76	Muller	Apoe	0.9235	183	0.9439	2389
77	Muller	Lcn2	0.0164	183	0.0096	2389
78	Muller	Spp1	0.0164	183	0.0088	2389
79	Muller	Trem2	0.0	183	0.0029	2389
80	Microglia	Ifnar1	0.25	8	0.0682	132
81	Microglia	Ifnar2	0.375	8	0.1364	132
82	Microglia	Jak1	0.75	8	0.2424	132
83	Microglia	Jak2	0.5	8	0.0455	132
84	Microglia	Stat1	0.125	8	0.053	132
85	Microglia	Stat2	0.125	8	0.0758	132
86	Microglia	Stat3	0.5	8	0.1667	132
87	Microglia	Irf7	0.0	8	0.0303	132
88	Microglia	Irf9	0.125	8	0.0606	132
89	Microglia	Isg15	0.0	8	0.0	132
90	Microglia	Ifit1	0.0	8	0.0	132
91	Microglia	Ifit2	0.0	8	0.0152	132
92	Microglia	Ifit3	0.0	8	0.0152	132
93	Microglia	Mx1	0.0	8	0.0152	132
94	Microglia	Tnf	0.0	8	0.0227	132
95	Microglia	C3	0.0	8	0.0	132
96	Microglia	C1qa	0.625	8	0.4091	132
97	Microglia	Mb21d1	0.0	8	0.0379	132
98	Microglia	Tmem173	0.125	8	0.053	132
99	Microglia	Nlrp3	0.125	8	0.053	132
100	Microglia	Gfap	0.0	8	0.0	132
101	Microglia	Serpina3n	0.0	8	0.0	132
102	Microglia	Apoe	0.125	8	0.6288	132
103	Microglia	Lcn2	0.0	8	0.0	132
104	Microglia	Spp1	0.0	8	0.0227	132
105	Microglia	Trem2	0.25	8	0.1364	132
106	Astrocyte	Ifnar1	0.0667	15	0.0333	90
107	Astrocyte	Ifnar2	0.1333	15	0.0556	90
108	Astrocyte	Jak1	0.2667	15	0.1667	90
109	Astrocyte	Jak2	0.1333	15	0.0889	90
110	Astrocyte	Stat1	0.0667	15	0.0444	90
111	Astrocyte	Stat2	0.0667	15	0.0556	90
112	Astrocyte	Stat3	0.3333	15	0.2444	90
113	Astrocyte	Irf7	0.0667	15	0.0222	90
114	Astrocyte	Irf9	0.0667	15	0.0222	90
115	Astrocyte	Isg15	0.0667	15	0.0111	90
116	Astrocyte	Ifit1	0.0	15	0.0222	90
117	Astrocyte	Ifit2	0.1333	15	0.0222	90
118	Astrocyte	Ifit3	0.0667	15	0.0222	90
119	Astrocyte	Mx1	0.0	15	0.0	90
120	Astrocyte	Tnf	0.0	15	0.0	90
121	Astrocyte	C3	0.0	15	0.0	90
122	Astrocyte	C1qa	0.0	15	0.0	90
123	Astrocyte	Mb21d1	0.0	15	0.0	90
124	Astrocyte	Tmem173	0.0	15	0.0	90
125	Astrocyte	Nlrp3	0.0	15	0.0	90
126	Astrocyte	Gfap	0.4667	15	0.4444	90
127	Astrocyte	Serpina3n	0.1333	15	0.0222	90
128	Astrocyte	Apoe	0.9333	15	0.9	90
129	Astrocyte	Lcn2	0.0	15	0.0111	90
130	Astrocyte	Spp1	0.0	15	0.0111	90
131	Astrocyte	Trem2	0.0	15	0.0	90
132	Rod	Ifnar1	0.0152	1773	0.0141	7866
133	Rod	Ifnar2	0.0056	1773	0.0057	7866
134	Rod	Jak1	0.0908	1773	0.0824	7866
135	Rod	Jak2	0.0226	1773	0.0235	7866
136	Rod	Stat1	0.0113	1773	0.0136	7866
137	Rod	Stat2	0.0158	1773	0.0153	7866
138	Rod	Stat3	0.0259	1773	0.0317	7866
139	Rod	Irf7	0.0056	1773	0.0051	7866
140	Rod	Irf9	0.0045	1773	0.0055	7866
141	Rod	Isg15	0.0028	1773	0.0041	7866
142	Rod	Ifit1	0.0017	1773	0.0028	7866
143	Rod	Ifit2	0.0079	1773	0.0051	7866
144	Rod	Ifit3	0.0062	1773	0.0066	7866
145	Rod	Mx1	0.0	1773	0.0	7866
146	Rod	Tnf	0.0006	1773	0.0003	7866
147	Rod	C3	0.0011	1773	0.0022	7866
148	Rod	C1qa	0.0056	1773	0.0061	7866
149	Rod	Mb21d1	0.0	1773	0.0003	7866
150	Rod	Tmem173	0.0	1773	0.0008	7866
151	Rod	Nlrp3	0.0	1773	0.0001	7866
152	Rod	Gfap	0.0039	1773	0.0023	7866
153	Rod	Serpina3n	0.0062	1773	0.0057	7866
154	Rod	Apoe	0.4411	1773	0.5755	7866
155	Rod	Lcn2	0.0039	1773	0.0038	7866
156	Rod	Spp1	0.0085	1773	0.0131	7866
157	Rod	Trem2	0.0011	1773	0.0017	7866
158	Cone	Ifnar1	0.0101	99	0.0257	1208
159	Cone	Ifnar2	0.0	99	0.0058	1208
160	Cone	Jak1	0.1919	99	0.1399	1208
161	Cone	Jak2	0.2424	99	0.0712	1208
162	Cone	Stat1	0.101	99	0.0497	1208
163	Cone	Stat2	0.0808	99	0.0414	1208
164	Cone	Stat3	0.3131	99	0.1184	1208
165	Cone	Irf7	0.0	99	0.0033	1208
166	Cone	Irf9	0.0303	99	0.0141	1208
167	Cone	Isg15	0.0	99	0.0058	1208
168	Cone	Ifit1	0.0	99	0.0025	1208
169	Cone	Ifit2	0.0	99	0.0041	1208
170	Cone	Ifit3	0.0	99	0.0025	1208
171	Cone	Mx1	0.0	99	0.0	1208
172	Cone	Tnf	0.0	99	0.0008	1208
173	Cone	C3	0.0	99	0.0017	1208
174	Cone	C1qa	0.0101	99	0.0041	1208
175	Cone	Mb21d1	0.0	99	0.0017	1208
176	Cone	Tmem173	0.0	99	0.0	1208
177	Cone	Nlrp3	0.0	99	0.0	1208
178	Cone	Gfap	0.0	99	0.0008	1208
179	Cone	Serpina3n	0.0	99	0.0017	1208
180	Cone	Apoe	0.3535	99	0.4959	1208
181	Cone	Lcn2	0.0	99	0.0017	1208
182	Cone	Spp1	0.0101	99	0.0066	1208
183	Cone	Trem2	0.0	99	0.005	1208